Computational & Web Resources
Computational Resources
The Genomics Core has two high performance servers that allow for cluster level performance. These computers are equipped with Intel Xeon E5-2687W v2 processors (8 HT Cores, 3.4GHz), 256 GB 1866MHz DDR3 RAM, a NVIDIA Tesla K20c GPU, and 24 TB of storage space. Data is stored on a 50 TB shared network drive administered jointly by the core and UND IT.
If there is additional software you may need for your project, please contact the core to discuss installation.
To request access to servers, contact Cory Stejskal
Web Resources
UCSC Genome Browser -Genomic database for a large number of genomes.
Ensembl Genome Browser - Genomic database for vertebrate genomes.
Integrative Genome Browser - Visualization tool for genomic datasets.
Bioconductor - Tools for the analysis of High-throughput genomic data using the statistical programming language R.
PantherDB - Protein Analysis Through Evolutionary Relationships. Performs pathway analysis including over-representation analysis and enrichment analysis.
GeneCards - Database of Human Genes. A user-friendly database that provides information about all annotated and predicted human genes.
NCBI RefSeq Functional Elements - Database for non-genic functional elements that have are in literature and have been experimentally validated.