Bioinformatics Services

Bioinformatics services available via the UND School of Medicine & Health Sciences Genomics Core.

Cloud-based Platform

The Core developed a novice-oriented platform called genomEX, which, among many things, offers a cloud service where one-click pipelines for standard analysis can be run in fully personalized and dedicated high-performance computing environments.

For more information, please contact Dr. Damien Parrello at damien.parrello@und.edu

Available Pipelines

 RNA-seq: Gene expression, DEGs, DUEs, Annotation, Pathway analysis

ChIP-seq, CUT&RUN, ATAC-seq, CUT&TAG: Peak calling, Differential binding, Peak annotation, Motif analysis

PRO-seq, CoPRO, GRO-seq: Gene expression, DEGs, Polii positioning, Annotation

Single-cell RNA-seq: Gene expression, DEGs,  Cell type annotation

BS-seq, EM-seq:  CG, CHG, CHH contexts: Cluster definition, DMR, Annotation

Advanced Pipelines

(de novo) genome assembly (Illumina & Nanopore)

(de novo) transcriptome assembly (Illumina)

(de novo) Genome annotation (Illumina)

Variant calling

Paleogenomics

Requesting Services

For information on any of the Core’s services or to request a quote please contact Dr. Damien Parrello at damien.parrello@UND.edu