Bioinformatics Services

Bioinformatics services available via the UND School of Medicine & Health Sciences Genomics Core.

Cloud-Based Platform

The Core developed a novice-oriented platform called genomEX, which, among many things, offers a cloud service where one-click pipelines for standard analysis can be run in fully personalized and dedicated high-performance computing environments.

For more information, please contact Dr. Damien Parrello at damien.parrello@und.edu

Available Pipelines

Transcriptome Analysis

• RNA-seq
• Direct RNA-seq
• Single-cell RNA-seq
• Spatial RNA-seq
• Spatial single-cell RNA-seq

Epigenetic Marks

Methylation

• BS-seq
• EM-seq
• Direct RNA-seq
• Direct cell-free DNA

Inosine

• Direct RNA-seq

Chromatin Accessibility

• ATAC-seq
• Single-cell ATAC-seq

Protein-DNA Binding

• ChIP-seq
• CUT&RUN
• CUT&TAG

De Novo Reconstruction

• Genome assembly
• Transcriptome assembly

Nascent Transcription

• PRO-seq
• GRO-seq
• CoPRO

Requesting Services

For information on any of the Core’s services or to request a quote please contact Dr. Damien Parrello at damien.parrello@UND.edu