Bioinformatics Services
Bioinformatics services available via the UND School of Medicine & Health Sciences Genomics Core.
Cloud-based Platform
The Core developed a novice-oriented platform called genomEX, which, among many things, offers a cloud service where one-click pipelines for standard analysis can be run in fully personalized and dedicated high-performance computing environments.
For more information, please contact Dr. Damien Parrello at damien.parrello@und.edu
Available Pipelines
RNA-seq: Gene expression, DEGs, DUEs, Annotation, Pathway analysis
ChIP-seq, CUT&RUN, ATAC-seq, CUT&TAG: Peak calling, Differential binding, Peak annotation, Motif analysis
PRO-seq, CoPRO, GRO-seq: Gene expression, DEGs, Polii positioning, Annotation
Single-cell RNA-seq: Gene expression, DEGs, Cell type annotation
BS-seq, EM-seq: CG, CHG, CHH contexts: Cluster definition, DMR, Annotation
Advanced Pipelines
(de novo) genome assembly (Illumina & Nanopore)
(de novo) transcriptome assembly (Illumina)
(de novo) Genome annotation (Illumina)
Variant calling
Paleogenomics
Requesting Services
For information on any of the Core’s services or to request a quote please contact Dr. Damien Parrello at damien.parrello@UND.edu