Computational Data Analysis Core Analysis Pipeline and Equipment

1. We have deployed the NF-core suite of 125 open access data analysis pipelines for various types of analysis (https://nf-co.re/). Available pipelines are optimized for Nextflow or Docker controlled and isolated environments and are highly automated for reproducibility of results.
2. The CDAC provides the following services:
   1. Consultation
   2. Experimental Design
   3. Grant support
   4. Analysis:
      • Bulk RNA-Seq
      • Single-cell / single-nuclei RNA-seq
      • Spatial (Visium or GeoMx)
      • DNA-Seq (WGS or WES)
      • ChIP-Seq
      • ATAC-Seq
      • Single-cell ATAC-Seq
      • Methylation (WGBS, EM-SEQ, ERRBS, ect.)
      • Oxford Nanopore / Long-read analysis
      • Microbiome / 16S
      • Proteomics
3. Equipment:
   • • Dell PowerEdge FC830 blade server
       • 10Gb network capacity with 4x Intel Xeon E5-4669 v4 2.2GHz (174 HT Cores in total), 1 TB RAM, 16TB of SSD storage
       • Connected to the Genomics Core’s EpiDrive and 20TB Hur Lab storage