SciMiner: Bio-NLP (Natural Language Processing) web-application for finding molecular target
(gene/protein) in biomedical literatures and functional enrichment analyses (Gene,
GO, MeSH, Pathway, and PPI)
VO-SciMiner: Brucella vaccine literature indexed with an extended version of SciMiner using Vaccine
Ontology; collaboration with Dr. Yongqun Oliver He at University of Michigan
Ignet and Dignet: Integrated gene network and dynamic ignet, in collaboration with Dr. Yongqun Oliver
Omics Data Analysis
richR: An R package for functional enrichment and network analysis
vennDetail: An R package for subset analysis and generating Venn diagrams up to eight sets
Entrez ID2Symbol Converter: A web-based conversion tool between Entrez ID and gene symbol
PubChemSR: An Microsoft Windows-based application for searching and downloading chemical and
bioassay data from NCBI's PubChem chemical databases (v3.6.4 released on 12/18/2019)
Tox21 Enricher: A web-based chemical/biological functional annotation analysis tool based on Tox21
toxicity screening platform (v2.0 released on 10/01/2021)
Diabetic peripheral neuropathy knowledge-base (DPNKB): A web-based data repository and analysis portal of DN-related transcriptomics data.
DPNKB contains 140 differentially expressed gene (DEG) sets from 18 DPN-related high-throughput
gene expression profiling data.
ROS-Diabetes: A comprehensive list of Reactive Oxygen Species (ROS) and diabetes-related targets
(genes/proteins) mined from biomedical literature.
microRNA world for diabetes: A collection of web-pages focusing on two miRNAs.
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